Materials
This page is meant to help you quickly find course materials (documents, manuals, schedules, …) relating to the Education & Training. In the future, students will be able to quickly download lecture notes, assignments, and other deliverables directly from this page. If you are a past or present student, it may be a good idea to bookmark this page for future use.
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Course Materials
Summer B Lab Molecular Cloning and Protein Chemistry for Graduate Students (GMS 6004, ALS 5905, PHA 6522L, VME 6934, section 5261)
- Course Schedule(.pdf, size: 183Kb)(2002 Reference)
- Course Manual (.pdf, size: 2.47Mb)(2002 Reference)
Medical Biochemistry Lab (BMS 5204)
- Course Schedule (.pdf, size: 170Kb)(2003 Reference)
- Course Manual(.pdf, size: 332Kb) (2003 Reference)
Lecture Notes
Summer B Lab Molecular Cloning and Protein Chemistry for Graduate Students (GMS 6004, ALS 5905, PHA 6522L, VME 6934, section 5261)
- Bioinformatics I: Introduction to Web-based Tools and Databases(.ppt, size: 1.78Mb) from William Farmerie, PhD
- Bioinformatics II: Introduction to PepTools(.ppt, size:607Kb) from Li Liu, MD
- Bioinformatics III: Introduction to GeneTools(.ppt, size:681Kb) from Li Liu, MD
- Bioinformatics IV: Cloning in Silico(.ppt, size: 526kb) from Li Liu, MD
- Structural Analysis of Proteins: X-Ray Crystallography(.ppt, size: 10.7Mb) from Mavis Agbandje-McKenna, PhD
- Immunocytochemical Detection of Antigens(.ppt, size: 29.5Mb) from Greg Erdos, PhD
- Microarrays: The Basics and its Applications(.ppt, size: 989Kb) from Mick Popp, PhD
- Microarray Approaches to Environmental Studies(.ppt, size:2.55mb) from Patrick Larkin, PhD
- ABI Prism 7700 Sequence Detection System (Taqman) (.ppt, size: 1.22Mb) from Nancy Denslow, PhD
- Molecular Applications to Animal Sciences(.ppt, size: 2.17Mb) from Karen Moore, PhD
- Ethical Issues in Biotechnology from Maria Gallo-Maegher
- Immunocyto Chemistry (.ppt, size: 32.2Mb) from Greg W. Erdos, PhD
- Tissue Array(.ppt, size: 0.97Mb) from Greg W. Erdos, PhD
Surveys
Bioinformatics Tool Surveys
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Alignment/Similarity Search Tools
- BLAST
- FASTA
- ClustalW & ClustalX
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Chromatogram & Sequence Assembly Tools
- Phred/Phrap System
- TranscriptAssembler
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Gene Structure Prediction Tools
- Glimmer & GlimmerM
- Grail & GrailExp
- GenScan
- ESTScan
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Integrated Bioinformatics Software
- BioTools (GeneTool & PepTool)
- BioEdit
- pDRAW32
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Microarray Data Analysis Tools
- BRB Tools
- ICBR AnalyzeIt Tools
- Cluster & TreeView
- Pathway & Function Analysis (KEGG, GenMAPP & Gene Ontology)
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Microarray/Macroarray Image Processing Tools
- GPC VisualGrid
- TIGR SpotFinder
- ScanAlyze
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Molecule Structure Prediction & Visualization Tools
- Cn3D
- RasMol
- 2D Structure Prediction Tools
- Swiss-Model
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Pattern/Motif/Protein Family Finding Tools
- InterProScan
- HMMER
- Protein Clustering (GeneRAGE & TRIBE-MCL)
- Protein Structure Classification (SCOP & CATH)
- MACAW
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Primer & Probe Design Tools
- Oligo
- Primer3
- Melting Temperature Calculation Tools (BioMath)
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Public Databases
- NCBI Databases
- EBI Databases and DDBJ Databases
- TIGR Databases
- PDB Database
- Gene Symbol Database (HUGO)
- KEGG Pathway Database
- Eukaryote Promoter Database (EPD)
- Transcription Factor Database (TRANSFAC)